rs50233838 SNP Detail

Summary

• ID
  rs50233838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58296452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGCTCT TCATGTCCCA
  GCCCCACAAC GGTTACTATG GTTACTATGA CCCACCAAGT GACATAACAG CTTCTGGGGT
  CAGAGAGTCT CAACACTGAC ACACACAGAA TGTGATTTTT ACAGAGTCGC CAAAAAGCCT
  CTGCAAGCAG GTGTTGTCCG GCACAGAATC AAGAAGGAAC CTGAGGTACG GAGAAGACAA
  Y
  GCACCATAGC TTCGGAGCTG TGGTAAATAC GATCCGATCC TGAGCAGAAT CCGGTCTCCA
  GGCTCTGGCA CCTCCTGCTA CCTCCCGGAT TCTGAAGACT TCGCATTTTT GGGAAGGAGG
  GCGGGAGATA GGGAGGCCAG ACTCTACGCT GCTGCCAGCT TCTCTGGAGG ATGGAGAAGC
  TGACAGAATA CAGTGGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61812783	NES17745631	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50233838					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61812783	NES17745631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58296452 () rs orientation: forward

Symbol	Name	Function Class
1700066J03Rik	RIKEN cDNA 1700066J03 gene	within coordinates
Cpgi5721	CpG island 5721	within coordinates
Gm48295	predicted gene, 48295	within coordinates
Rr480978	regulatory region 480978	93 bp distal
Rr480979	regulatory region 480979	within coordinates
Rr480980	regulatory region 480980	469 bp proximal
Tssr120063	transcription start site region 120063	114 bp downstream
Tssr120064	transcription start site region 120064	90 bp downstream
Tssr120065	transcription start site region 120065	72 bp downstream