rs50234053 SNP Detail

Summary

• ID
  rs50234053
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:39835785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATCAGT TTATTGTAGA
  GTTAGTAATA GTTCAGAGTG CGGTGGCTAC AGACCCAGGC AATGCTAGGA AAGTTTGCTG
  CAGTTAGAAA ACAGTGCGAT TAATTTCGAA CTGGACAGCA ACCCTCAGTG ATTAAAATAG
  CGCCCATGAG ACAGCTGATG AGCCCGAAGT GCCAAGTCAC AGAACGTGCA GGGAGCGAAT
  K
  TGAGAGTCGA GCTGGGAAGG GCAGGTCCCC TGAAGGAGGC TCGCGCCCCA GCCTGGGAGG
  GGTGCAGCCT CAGCTCTCAC CAGCCCCAGG AAGGCGGCAT ACAGGACCAC GGTGGAGAAC
  CAGCGCAGCA CGCTCTTGGC GCGGACACTC CGCCGGAAGG CCACCGCCTT CTGGTCATTC
  TGCGCTGTGG TCTCGGTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61271498	NES16888097	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50234053					SNP	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61271498	NES16888097	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39835785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	within coordinates
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	within coordinates
Mfsd4b5	major facilitator superfamily domain containing 4B5	within coordinates
Rr214610	regulatory region 214610	1185 bp distal
Rr224689	regulatory region 224689	within coordinates
Rr401837	regulatory region 401837	381 bp upstream
Tssr97348	transcription start site region 97348	355 bp downstream
Tssr97349	transcription start site region 97349	383 bp downstream
Tssr97350	transcription start site region 97350	406 bp downstream
Tssr97351	transcription start site region 97351	454 bp downstream