rs50234826 SNP Detail

Summary

• ID
  rs50234826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70897174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCCGGTT GAAAGACTTG
  AAGTTTGTCT ATTTTAAGTA TCTATCAGAA TGTAAATTCT GTACTTGTAG AACTCTGAGA
  GAGTTTACCA CCACCTGGGA GCCATTTTCA CCCGACTTCA GTTCATCTAC TGGGAAGGTA
  TGCTATTTGT ACTTGTGCTA AGAAAACTAC AGTTCAGATA AATAACACTT GAGCTTCTCC
  R
  TCTAGATAGG TAGGTGAACA AGAAGGCAAT AGATCACATG ATTTGAAAGC AAGTGACACA
  GCTCCTGACT TACATTAAGA TGAGGCATGA GTAGGGGATA TGGGTCAGGG ATTTGGGTTT
  CCGGACTGGA CCAAGAGCAG AAACAATGAA CAGAGCAATG TCAGCTGCCC CATTCCAGCC
  CATGAAGCTT AGCTGGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52652466	NES15473969	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	A		A
ss324416649	CHEV_13_70887933	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs50234826					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652466	NES15473969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70897174 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Tssr123156	transcription start site region 123156	1027 bp downstream