rs50235069 SNP Detail

Summary

• ID
  rs50235069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:101009167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACATAT TTCACAACAC
  ATCAGGTCTC TGTACTGGCA AAGTGCCTTT TGTATTATAG TTCTTCTCTG CTCTTACTAT
  ATAAGCCACC TGCAAGTGAA CCTAGGTAAA GATTATCTTC ATGGAGAAGT AATTCTTTTT
  CTGTCTTTAG TCACATTAAT TCTCCTAGGC TGGCCGAGGA AGATGGTGTC CTTGACTGGG
  Y
  TCAGATATGC TGAGTAGGAT CTTCCTCAGT TTTGCATTTC CTCATTGTTA GCTTGTAGAT
  AAGGGTTAAC CCCTTCCAGC CCTGTTACAG TGGCTCTAAG TTGCTGGGAA TATAACTACT
  CCTTTCCTCT TATTCTTTCT GGGATCACAT GCATTCCAGA GGCACACTGA GGAGGAAGGG
  CGAGACAGGA GGAATGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61202767	NES16711401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50235069					SNP	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61202767	NES16711401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101009167 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	715 bp upstream
Gpat3	glycerol-3-phosphate acyltransferase 3	within coordinates
Rr378349	regulatory region 378349	1131 bp upstream
Rr615578	regulatory region 615578	within coordinates
Rr615579	regulatory region 615579	347 bp proximal
Rr615580	regulatory region 615580	726 bp proximal
Tssr47495	transcription start site region 47495	716 bp upstream