rs50238325 SNP Detail

Summary

• ID
  rs50238325
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25784804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTCAAA ATGAGGAAGC
  CAGACAAGGC TAAAGGCATG GTGTTTAAAT TCAGACCAAG TGGTTGTGAC AGGGTTGGCT
  ACCTCCCTAA GGTGAGGAAG TTCCCACCTT GGGGAGTCTG GGCTGGCTTG CTCCCCTCCC
  CCCAGTGGCC TGCTTAAGGC AGCTGGACCC AGGCTCTCAG CAGAGTTGCA CCCATCTCTG
  M
  CAGGAACCTT CCTGTAAGAA CCCCCAGGCT TAATTATAAG AAGTAATACT CAAAACATGC
  TCCAAGTAGA GAAAACATTT TTTTTTTTAA ATTTTATCAA ATTTATCTGT ACAAAAGTTA
  GCATTGCCTG GTCAGAAAGG AACGAAACAC AGCGAGTAAA GGACAGCAAA TGTCTTTCTG
  AATTCAACAC CAAAAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145393091	ENSMUSSNP5011198	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50238325					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25784804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8770	CpG island 8770	1580 bp proximal
Rr523604	regulatory region 523604	1026 bp distal
Rr523605	regulatory region 523605	5 bp distal
Sox8	SRY (sex determining region Y)-box 8	mRNA-UTR
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr146844	transcription start site region 146844	187 bp downstream