rs50239729 SNP Detail

Summary

• ID
  rs50239729
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133271402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGA GCAGCTTCTT AAGGAGAGAT
  T
  GATGGAACCC AGCCTATTGG GGGCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147498150	ENSMUSSNP2887702	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50239729					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133271402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15007	CpG island 15007	1310 bp proximal
Nudc	nudC nuclear distribution protein	within coordinates
Rr398556	regulatory region 398556	1857 bp upstream
Rr601358	regulatory region 601358	1895 bp proximal
Tssr43767	transcription start site region 43767	1527 bp downstream
Tssr43768	transcription start site region 43768	1815 bp downstream