rs50240015 SNP Detail

Summary

• ID
  rs50240015
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72901765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTGAAA GTCCCCATCC
  ACGTACTCCA TGCCCGGCAG CTTCATTCCG TACTTGTCCA CACACCAGCA GATGCCACGT
  TTGCGGCCAC GGGAGGGCTT ACACTGGGAG AGAGACAAGC GGCTGTGAGA TACCCGAGCG
  GCGGTGTACC CCGAGGCTCT CTTCTGGCTC TGACCTTTCC CGATGCACTT GAGGGTTAAA
  M
  GGATTCCGCC TTTAGCTAAC TCTTGGGGTT TTGCTGATTC TATCTCATGG GAGGACCCAA
  AGAAAATAGT TAGTTCAGGC ATCCTGCCCT GGGATAGGTC CTGCCATCTC CCTTTCATTA
  TTTACTTTGG GTTACCCATC TCACGTTCTC CAGGGATCCT CAAGAGAGGA CCTCGGTCAT
  CAAAGTATGA AACACTACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750497	NES16391654	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50240015					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750497	NES16391654	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72901765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	2 bp distal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr22903	regulatory region 22903	1236 bp proximal
Rr22904	regulatory region 22904	1836 bp proximal
Rr34509	regulatory region 34509	565 bp distal
Tssr7342	transcription start site region 7342	227 bp downstream
Tssr7343	transcription start site region 7343	1293 bp upstream
Tssr12191	transcription start site region 12191	1567 bp upstream
Tssr12192	transcription start site region 12192	1087 bp upstream
Tssr12193	transcription start site region 12193	934 bp upstream
Tssr12194	transcription start site region 12194	735 bp upstream
Tssr12195	transcription start site region 12195	383 bp upstream
Tssr12196	transcription start site region 12196	300 bp upstream
Tssr12197	transcription start site region 12197	281 bp upstream
Tssr12198	transcription start site region 12198	227 bp upstream
Tssr12199	transcription start site region 12199	608 bp downstream