rs50240639 SNP Detail

Summary

• ID
  rs50240639
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41366269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACGTGTT TGCACAGCCC CACTCATGCA CACAAAAGCA
  AGAAATCCCT ACAGTAAAGT GGCAGAATTA CAAACTGGCA CATTTCATTT GGCTTAGGGT
  W
  TTCTTTGTGT TAAAAAAAGA TCAGGTCAAA TAACAAAACA GATCCCAATG GTGTTGGGAA
  ATAAACTAGG AAAGATTTGT TTGCTCAGTT GACGTTGCCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60600912	NES16305380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50240639					SNP	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600912	NES16305380	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41366269 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	1502 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77038	transcription start site region 77038	595 bp downstream
Tssr77039	transcription start site region 77039	726 bp upstream
Tssr77040	transcription start site region 77040	771 bp upstream
Tssr77041	transcription start site region 77041	1679 bp upstream
Tssr77042	transcription start site region 77042	1821 bp upstream