rs50240732 SNP Detail

Summary

• ID
  rs50240732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77862291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCGTCTG GCCTGCCCGG
  AAGCTTGTCC TGGGGTCCGG CTCTGCTGAA GGTCAGAGGA GCTGTCAGCC GTCTTGTGCC
  GGAGGAGGAG GAGGAGGCGA GCCTGACATT GTGTGAAGGT CAACAGGCCG GAGCAGTTCA
  CCTCTGCTCC GAGGTCAATC CAAGGGAAAG GAATAAATGA AAGTGACTCT TGCATTGTGG
  R
  ATGGTTTACC CATTTGGAGC TGACCCCGGG AAAGGTCGTG ACAACATCGT GAGGCGCAGA
  AGCAGTGTCT GTGGCTTAAA CTGTGGACGA CGATGGCGTA TTTGTAAATG GCCTGCATTA
  GGCACAAAAC CTGGTGTTTG ACACTTTAAA AGATTTTTGC CCTTGAGTTG TCCACCTCAT
  GATCTCCCAG GACGTTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555367	ENSMUSSNP5569034	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50240732					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77862291 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Cpgi10281	CpG island 10281	within coordinates
Haus1	HAUS augmin-like complex, subunit 1	705 bp upstream
Rr393942	regulatory region 393942	158 bp downstream
Rr541176	regulatory region 541176	852 bp distal
Rr541177	regulatory region 541177	716 bp distal
Rr541178	regulatory region 541178	625 bp distal
Rr541179	regulatory region 541179	within coordinates
Tssr152041	transcription start site region 152041	585 bp downstream
Tssr152042	transcription start site region 152042	1197 bp upstream