rs50242340 SNP Detail

Summary

• ID
  rs50242340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATTCAA AAGGTGCTCC
  AGGCAAACGG AGACCAGCAG GGACCAGAGA CTACCTGTAC TTTAGTCCTA AACTTAGTAA
  ACAAAGTGGG CTGCAAAGAC TGATTACCAG TCAAAGGCCA TCATCGAGGC AGAGACAAAT
  GGATCTCCGA GTGCGAGATC AGACTGGACT CCACAGCTCA GACCAGCCAG GGCTACACAG
  Y
  GACACCCTGT CTCAAAGAAA GGCCTTTACA GAATGAGAAA GCATTTTCAT GTACAGCTTT
  AAATAACTCA TGAATTTAAT ATCGGACCAC ATACCACACG AAAGGGTCTG AAGAGGCCAC
  TAAGGCATGC CGCTCAAGTC TAATCTGACC TGAACTCTGG AAGTGTTTGG GCTTCATGTC
  CTTTGTCCTC CTGTCTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss148941455	ENSMUSSNP2942344	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss319691759	CHEV_1_37530862	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs50242340					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513098 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	626 bp upstream
Rr409534	regulatory region 409534	1831 bp distal
Rr409535	regulatory region 409535	314 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1438 bp downstream