rs50242599 SNP Detail

Summary

• ID
  rs50242599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4761920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCACTAG CAGGTGATAG
  GAGTTAGTCC AGGGCTAAAG CTCTAGTTGA TTAGAGAGAC ACACATCAGG AGCTGGAAGC
  ATAGCCAATG GCAGAGCGTG GTTAAGAAGC ATGGGGGTCC ATTTCCAGCA TCAGAGAGTG
  TGTGAGAATA GACAGAAGCC CTACAGCATT GCCTTTTCAC TGTGGTGGTC GTCTACATTC
  Y
  CAGAGTAACA CGACTCACTT CCTCTTTTGT AGCCCGTTCT CAAAAGACTT CAGGTATTGG
  GCGTCTGATG GTGCATGTCA TTGAAGCTAC AGAATTAAAA GCCTGCAAAC CAAACGGTAA
  GTGCTGCTTT CATTCAACAG ATGTGGTGGC ACCCTGTTCC TTCCCTCTTT AGTCTTTAAA
  AGGCAGTGTC TCTGGTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61339094	NES16947236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50242599					SNP	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339094	NES16947236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4761920 () rs orientation: forward

Symbol	Name	Function Class
Fam228a	family with sequence similarity 228, member A	1750 bp downstream
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260649	regulatory region 260649	881 bp proximal
Tssr112576	transcription start site region 112576	416 bp upstream
Tssr112577	transcription start site region 112577	435 bp upstream
Tssr115645	transcription start site region 115645	295 bp downstream