rs50242787 SNP Detail

Summary

• ID
  rs50242787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74112615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCCTGT TGGTGGGCCA
  GTACTCTACC GGCAAGACCA CCTTCATCAG GTGAGCCTCA TCTGGGTGCT GAGCCTTCCG
  GGTGACGTGG AAAGTCTTCC ATTAAGGGCT CTGAAGAAAT CCCTGTGGGA GGCCTCAAAA
  GTTGATCCTA CTACCGAGTC CCCCATTGAT TCCTATATGA TGTCCCTCCT CAGTTCTTAG
  Y
  CCTGGTCATT TTATTAAGAG TCATCCCTGT TGTCTGATCT GGGCACTGAA ACTGAGGCAC
  AGAAGGAACC AGACTCCTAA TGAAGGTGGG GATACCGTAA CCCTCCTTTT GACTAGAATC
  TCTTATCTCG TGAAGGGCTT GGGATTATCC CGGGGAGCCT TACCTTTGCA GCCGAGTTGT
  TCTCATGGTC GCGGGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60279634	NES15784902	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50242787					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279634	NES15784902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74112615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	117 bp distal
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	769 bp distal
Rr530825	regulatory region 530825	959 bp distal
Rr530826	regulatory region 530826	653 bp proximal
Rr530827	regulatory region 530827	1718 bp proximal
Tssr145810	transcription start site region 145810	781 bp downstream
Tssr145811	transcription start site region 145811	749 bp downstream
Tssr145812	transcription start site region 145812	719 bp downstream
Tssr145813	transcription start site region 145813	679 bp downstream
Tssr145814	transcription start site region 145814	664 bp downstream