rs50242856 SNP Detail

Summary

• ID
  rs50242856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:19306550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCTCTC AGCAGCTATC
  AATGGCCACT AGCTCCTCAG AAGGGTGTAG TACTTTATGC CCCTCCCTGC TTCATCCGGA
  AATGTTGTCT GGTTTGAGCT TGCAGCGATC TAGCTCATGC TGTTCATACG TGCAACTGTC
  TTGTGTCCAT ATAACACTTG CAGTCATCCA CCATCTCTGG TTCCTACAGT CTTTCTACTT
  Y
  CTCTTCCACA AGGATTTCTG AGCCAGGAAG GGTATGATAT GTCCTATTTG AGGTAGAGCA
  TTTTTTAGTC CCTTTTTCTG CATGTTAACC CACTGTGGGT CTCTGTGGTA ATGGCTATCT
  GCTGTAATCA ACCTCTCTGA AGAGGGTTAA GAGATGCACT ATTCTATGGA GATAGTATTA
  AGACATTGTG AGTTGAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52161350	NES15231841	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50242856					SNP	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52161350	NES15231841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:19306550 () rs orientation: forward

Symbol	Name	Function Class
Gm67532	predicted gene, 67532	within coordinates
Rr384229	regulatory region 384229	1144 bp upstream