rs50242949 SNP Detail

Summary

• ID
  rs50242949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:96287251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTGGGC TAGAATGATC
  ACACCTCTGA ACCCTTCTCC TTCTTCTTTC TTCCTAACTG GATGGAGGGG AGGGAGGACC
  AGCGTCCCTC CCTCGGGAAG AAGAGCTGTA CTGGCTCTAC AGCTTCCTGC CCCCTGCCAC
  AGCTGCAGTT ACTCCGTCTG CTCACCGGGC CTGCCATACT GCAGCCTTCC GTTTCCTGAA
  R
  GAGCAGTCCT CTGGGGCTCA GGAGTTCTAC CCCACAGATA TCTCACGCAT GGCAAGAAGG
  CCGAGGCTTA GCCTACTTAC CAGTCAGTCC CCTTGACTGG AAGAGTCAGG AAAACTGGCC
  AGTTACCACT GAGGCAAGCA GCCCAGTTCT AATGTGATGC GGAGATGAGC TAGTACCGGT
  GAGAAGTTCA GCTCTGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60650947	NES16266192	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50242949					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60650947	NES16266192	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96287251 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc113	coiled-coil domain containing 113			1733 bp downstream
Prss54	serine protease 54			Intron
				Noncoding-Transcript-Variant