rs50243209 SNP Detail

Summary

• ID
  rs50243209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA AGCTGCTCAT CCCAGGATCC
  R
  GCTCCAGAAA CGTCCTGTGA CCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60557927	NES16578184	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50243209					SNP	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557927	NES16578184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579690 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	188 bp upstream
Rr405148	regulatory region 405148	14 bp upstream
Rr524885	regulatory region 524885	9 bp proximal
Rr524886	regulatory region 524886	406 bp proximal
Rr524887	regulatory region 524887	904 bp proximal
Tssr143531	transcription start site region 143531	193 bp upstream
Tssr143532	transcription start site region 143532	207 bp upstream
Tssr143533	transcription start site region 143533	240 bp upstream
Tssr143534	transcription start site region 143534	253 bp upstream