rs50244379 SNP Detail

Summary

• ID
  rs50244379
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113173453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CAGAGGCAGG TGGATCTCCC
  A
  GCTCCAGGCC AGCCTGGTCT ACACA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145257076	ENSMUSSNP2163294	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs50244379					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113173453 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	1393 bp distal
Mir449a	microRNA 449a	615 bp upstream
Mir449b	microRNA 449b	500 bp upstream
Mir449c	microRNA 449c	828 bp downstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	within coordinates
Rr486471	regulatory region 486471	1530 bp distal
Rr486472	regulatory region 486472	794 bp distal
Rr486473	regulatory region 486473	1328 bp proximal
Tssr121165	transcription start site region 121165	1688 bp downstream
Tssr121166	transcription start site region 121166	691 bp upstream