rs50244514 SNP Detail

Summary

• ID
  rs50244514
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34353707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGATTTCT GTCTTCTCCA CCGGGCTAGG GACTCCCTTT
  GCTCTAGGAT CCATATTCAC TCATTTATCT ATTATCAGTG CGCTAGCCCA GGACGTGGCA
  C
  TTGGTGGATG CTTGATATGA GCAGATGCTC ACGATTAGCT GTAGTGTGCG CAGGAAAAGT
  CTACCAATTT GGTTTCAGTT CAATTGAGAA AGGTGAGCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146937873	ENSMUSSNP4335604	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50244514					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34353707 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	270 bp upstream
Cpgi9813	CpG island 9813	within coordinates
Rr370354	regulatory region 370354	138 bp upstream
Rr535610	regulatory region 535610	within coordinates
Rr535611	regulatory region 535611	263 bp proximal
Rr535612	regulatory region 535612	341 bp proximal
Rr535613	regulatory region 535613	694 bp proximal
Rr535614	regulatory region 535614	1003 bp proximal
Rr535615	regulatory region 535615	1922 bp proximal
Tssr150444	transcription start site region 150444	236 bp upstream
Tssr150445	transcription start site region 150445	300 bp upstream
Tssr150446	transcription start site region 150446	324 bp upstream
Tssr150447	transcription start site region 150447	454 bp upstream
Tssr152786	transcription start site region 152786	979 bp downstream