rs50245040 SNP Detail

Summary

• ID
  rs50245040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTACTAC ATGTTTGTAC TTTCCTAATG GGTAGTTTAA
  TTTTGTTTAT TAATTAGTTT GTGTGAATAG ACTCAGAGCG TATACTTTTC CATGTATCCC
  Y
  GCCACCCCTT AGTTCTGTTT GTTGGTCCTT CCCAGGAGAG GGTTAAGGCT CCTGAAAACA
  AAGCTTACAG TGTACCCAAG GAGGAAGCAA GGCACCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135737739	ENSMUSSNP5882379	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320909875	CHEV_3_121946415	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50245040					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1720 bp proximal
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1702 bp upstream
Rr584261	regulatory region 584261	383 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	278 bp distal
Rr584264	regulatory region 584264	356 bp proximal
Rr584265	regulatory region 584265	1245 bp proximal
Rr584266	regulatory region 584266	1843 bp proximal
Rr584267	regulatory region 584267	1976 bp proximal
Tssr31477	transcription start site region 31477	368 bp downstream
Tssr31478	transcription start site region 31478	1979 bp upstream
Tssr35443	transcription start site region 35443	1722 bp downstream
Tssr35444	transcription start site region 35444	1805 bp downstream