rs50245249 SNP Detail

Summary

• ID
  rs50245249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:39836930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGCAGAT AGCAACCGGT
  AGTTATTACA GAACAGCAAA GTAGCGCTTC CTTCTCTCGC TGTGGCCAAG ATGGCAGAGA
  CCAGTCGAAT GCAGTACTAA ATGGAGTGCA GCTGGATGCA GATGAAGGCC ACAGAAAAAG
  TAAAAGTACC ACCGCCCAAT TTCTGGTCAG GAACAAGGAG TCCACGTTCC AAATTCTAGA
  R
  GCGGTGCAAG ACCTGGAGTG GACTATGTAG AAACAGTGAA AACATTTTGA GGTGCTCTAC
  TTACGAGCTC CCCAACCCAA GACATTTTAC TTTCAAGGCT AACAGATCTT GACCTTGGTC
  AACTCCTTCT AAAACCTCTA GATCAAAAAC CAGCTCCTTG TGTAATGGGC CCGATGAAAG
  ACCTCTTGAT TGTCTGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61271493	NES16888103	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50245249					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61271493	NES16888103	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39836930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	531 bp distal
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	844 bp upstream
Mfsd4b5	major facilitator superfamily domain containing 4B5	within coordinates
Rr224689	regulatory region 224689	129 bp distal
Rr401837	regulatory region 401837	463 bp downstream
Tssr97348	transcription start site region 97348	772 bp upstream
Tssr97349	transcription start site region 97349	747 bp upstream
Tssr97350	transcription start site region 97350	701 bp upstream
Tssr97351	transcription start site region 97351	651 bp upstream