rs50245737 SNP Detail

Summary

• ID
  rs50245737
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76544623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCTGC AGGGTGCTGT
  GTTCCTCAGT GCTACAGCTT CCTGATATGG GAAGGCCTGT AGGCCTCTGT GTTCTTCCTC
  TTAGAAACAG ATGGGCAGTG TCTATGGGCC AGGGCAGCTT CTCCTCTGCC CTGTGGTATG
  TCTGGCATTG ACTTCTCTTT CCAAGTGTGT TGGGTAATGT GTTTGTAGAT AAAGAGGCAC
  S
  GAGAAAAATG GAAACCTTTA TTAGCAGAGA TAGCTGGCTT GGATCAGATT ACGGGGAATG
  TGGGGGAGCC ATGAAGAAAC TAACTAAAGG GGAGCCTTTG GGGACCAGGG GGAGACAAGT
  CACTATTTTG AGGGAGAAAG CTCTGGATTG ATTCTGACAG GACACTTGAG TGTGAACTGT
  CCAAGCTAAG CCTCTGGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61288985	NES16903929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50245737					SNP	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288985	NES16903929	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76544623 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	3 bp downstream
Tssr98195	transcription start site region 98195	313 bp downstream
Tssr98196	transcription start site region 98196	509 bp downstream
Tssr98197	transcription start site region 98197	702 bp downstream
Tssr98198	transcription start site region 98198	746 bp downstream
Tssr98199	transcription start site region 98199	853 bp downstream
Tssr98200	transcription start site region 98200	894 bp downstream