rs50246423 SNP Detail

Summary

• ID
  rs50246423
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53614587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAC CCAAGAACAC ATTAGATCTG
  W
  AAACCAACTC TCAAATGTAG TAGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61805371	NES17736150	PERLEGEN	MM_PANEL2	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50246423					SNP	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805371	NES17736150	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53614587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	1352 bp proximal
Gm33763	predicted gene, 33763	1518 bp upstream
Rr388456	regulatory region 388456	254 bp upstream
Rr480050	regulatory region 480050	1087 bp proximal
Rr480051	regulatory region 480051	1478 bp proximal
Rr480052	regulatory region 480052	1571 bp proximal