rs50246793 SNP Detail

Summary

• ID
  rs50246793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121667284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACAGAT TGTTCCCAAA
  AGAAACAAAG GAAGGTCTTG GGCTGGGCTC CAAATAGCCC TGGCTTCTTT TGACTTTCTA
  CCAACTTCTA CAGGCCTAGA GCTTCTAAGA TCAAGGCAGG ATGGGATGCT AGTCACATGT
  AATGTGTATG GGTAGATTAT GGCTTGAGAT TTCCTGGGCA GCAGATTGAA AGTGGTACCA
  R
  AAGTTTTGTT CAAAACCACT TCAAAGCACA TCATAGGATG CAGTAGAGAG GCCAACAGGC
  CTACCTGTAT TCAATCTCCA CACTGGGTTT CTGGGACAAT ACTTCAACAA CTTTTGGTTG
  ATAGTACCTG TAACTTAGCT GGGAGTCATG CCGTTTCAAA CAGGAGGTTG TTATCTCAGA
  TAAAACTAGA CCCATCATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60833799	NES16021399	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50246793					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60833799	NES16021399	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121667284 () rs orientation: forward

Symbol	Name	Function Class
Gm15547	predicted gene 15547	1342 bp downstream
Gm42878	predicted gene 42878	within coordinates
Gm71452	predicted gene, 71452	1772 bp downstream
Mapkapk5	MAP kinase-activated protein kinase 5	within coordinates
Rr108908	regulatory region 108908	1084 bp distal
Tssr53036	transcription start site region 53036	1963 bp upstream
Tssr53037	transcription start site region 53037	1952 bp upstream