rs50247391 SNP Detail

Summary

• ID
  rs50247391
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29265085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTGTTCT TAAGACAGTA
  AACCCAGGTG CTCAGTAAGA GCAGAGAGCA CTTTTAACTC CTGAGGCAAT GGATCATCTA
  TAGCCCCGAA GCCGCGCGTG AGATGATTCC TTGTGCTACC CACATCTCAG GATTTAGAAA
  ATAAGCTAAG ACTCAGGGAA GGTGAGGGAC TGGGCTGATA AATTACAGCT CGGTCACCTC
  K
  CCAATCAACC CTTCACCCTG AGAGGGTGCT GGCAATATGC CAGCCGCCCT GGCAGATAAA
  GCCTCAGACA GATGGCAAAC AGAGCTTGCC CCAAGGAGTC AACACAGGTC TGATTTAACC
  TGTGGTTTGT GCTTGTCCCT GCCCCCAGGG CTGCCTGCTC GTGTTCTGCT TTTGTCACCA
  CCCCACTCCT GTGGCCAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559294	NES16575709	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50247391					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559294	NES16575709	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29265085 () rs orientation: forward

Symbol	Name	Function Class
Rr524769	regulatory region 524769	within coordinates
Rr524770	regulatory region 524770	1020 bp distal
Rr524771	regulatory region 524771	748 bp proximal
Rr524772	regulatory region 524772	967 bp proximal
Rr524773	regulatory region 524773	1611 bp proximal
Tssr143492	transcription start site region 143492	1104 bp upstream