rs50248084 SNP Detail

Summary

• ID
  rs50248084
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24005299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTC TTTCCACTTA CTTCCCCCGT
  T
  TTTGACTCTG ACTCCCTCCT GGAGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145332688	ENSMUSSNP4549427	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50248084					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24005299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	5 bp distal
Flywch2	FLYWCH family member 2	244 bp upstream
Tssr146663	transcription start site region 146663	242 bp upstream
Tssr146664	transcription start site region 146664	203 bp upstream
Tssr146665	transcription start site region 146665	88 bp upstream