rs50248239 SNP Detail

Summary

• ID
  rs50248239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82966288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGGGTG ACAGGCATGA
  TTGACTGGAA ATTGAAAAGC CACCAGGAGA AGAGAGAGGG GTCTTCAGGA CCTGCCTTTC
  AGGTAAACGG TTTTCTGGAA CAAAGAGTTA GTCTGGGAGA AATAGCCCCT TGTTTCTTCT
  ACCACAGATA AGAAAGAAAA ACAAAAAACA AAAACCTCAG GGATTCTGTG GCGGGCAGGT
  Y
  ACCTCCCACG TCCTCTCTGT GAGCGTCACA TAAGTAACAC ACATTGCATT GCGCAGCTAG
  GAAAATTAGC AGTCATTGTC TCAAAATTGC CTGAGTTGAA AGGCGTTTTT CTTCCTCTAA
  ATTTCCAGGT ACTCGTGTGT TTGAATAAAC AGGTCCTTGA GCAGCGGGTC ACTGAGCAGC
  ACCGCCGCCT TCATCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52389720	NES15267952	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50248239					SNP	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52389720	NES15267952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82966288 () rs orientation: forward

Symbol	Name	Function Class
Chst11	carbohydrate sulfotransferase 11	within coordinates
Gm67967	predicted gene, 67967	within coordinates
Rr435928	regulatory region 435928	263 bp distal
Rr435929	regulatory region 435929	170 bp proximal