rs50249018 SNP Detail

Summary

• ID
  rs50249018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164290347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGTTTTC TAACTGATGA ATCCACAAGA CATCTGTGTA
  TTGAGACAAG CTAAGCTTCT CCATCTCCTT CCATCTTAGG GCCTATATGG TGGAGGTGGC
  Y
  GCAACCAAGA GAAAACGATA TATAGAGAAT GGTGTTGGCT TTGTTCTGGC AAAACAGAGG
  TGAGTGGTGT CGCCAACAAG TCATGACTCA CCCATATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145979025	ENSMUSSNP1793731	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50249018					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164290347 () rs orientation: forward

Symbol	Name	Function Class
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Rr422219	regulatory region 422219	894 bp distal
Rr422220	regulatory region 422220	740 bp distal
Rr422221	regulatory region 422221	436 bp distal
Tssr14749	transcription start site region 14749	1929 bp upstream
Tssr14750	transcription start site region 14750	1907 bp upstream