rs50249061 SNP Detail

Summary

• ID
  rs50249061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31181141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCCTAA TTGGCCAGTG
  TCTGGGTGCA ATCGTAGGCA GCTCATTGGC CAGTCCAGGC TGACTCTTGT TTGCTGCATC
  TATGTTGACG GCTGATGTGT TTTTAATCCC TGGGTCTGTT GTGAGCCCTC GGTTACCATG
  TATGTCTTTG GAGTGAGGGC AGAAAGTGGG TTTGACCCCG GCGTGCCTCT TTCCATGTCT
  R
  ATTTTATTCC TCTTACCACT CATGGGGACG GTTTTCATCT GTTCGTGATA CATATGCAGT
  TTTCACTTTT CTCTCTTTCT TTTGGAAGTT CTTGTTACAT TTTATTTTGT GCGCACGCGC
  GTGCGCAAAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAC ACCCACCATG CTGTATGTAT
  GGCCACCATG CTGTATGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61369411	NES16744382	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50249061					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61369411	NES16744382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31181141 () rs orientation: forward

Symbol	Name	Function Class
Gm51733	predicted gene, 51733	1065 bp downstream
Gm69959	predicted gene, 69959	within coordinates
Rr194404	regulatory region 194404	660 bp proximal
Rr208622	regulatory region 208622	1061 bp proximal