rs50249243 SNP Detail

Summary

• ID
  rs50249243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96320935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGTTCCT CAGTGTTTTC
  ATGATCTGTG GATCAACACT GCCCCTCCCC TCTCTCCCTC CCTCCTCTCT AGTCCTCCAC
  CCCACCCCCA TCCCACGAGG ATGTTACAGA TTTCTGACTG TGCCTCTAAT TCAGCTGAAT
  AAAACTGAAG TGGGACCCCA CGTGCTTGCA TTTCCTGGCT GAGAGGAGGT AAGACAACTG
  Y
  AGGTGCCCAG ATTCAGCCCG AACATTAGGC AAACTGCATT CACTTAGCTC AGACCTGGAG
  GCTCACGGTC TCAGAGATGC AACTGCAGGG ACCACTGGCC AAAAGAGCAG TGGGAACTGT
  GGCCATGGGG CTGTCATTGA CTGCTTTTTC TTTTTGTTTG TCTTGAGACC TTGTTTCCGG
  TAGTCCAGAC TTGCTTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61442160	NES16828201	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	C	C		T
ss323108994	CHEV_9_96339301	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50249243					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442160	NES16828201	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96320935 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	1656 bp distal
Cpgi22164	CpG island 22164	663 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	41 bp downstream
Rr368835	regulatory region 368835	559 bp downstream
Rr684963	regulatory region 684963	1192 bp distal
Rr684964	regulatory region 684964	within coordinates
Rr684965	regulatory region 684965	1044 bp distal
Tssr90963	transcription start site region 90963	656 bp upstream