rs50249963 SNP Detail

Summary

• ID
  rs50249963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72851388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGCCTTC CACCTCCGCA GGCCTGCAAC CCTTTGGCAC
  TCCCTGACAG TGCTGATATA GGGGAGTTTC CCCTGTCCCT CCCTCGGTCA GGGTCAGTCC
  Y
  CGCCAGGCAC CCTAAGCAAG GAACCCCTCT GCCTCGCTCG AGTTCCCGGG GATCTCTCTG
  AATCCCCACC GCACCATTCA CCTGTTGGGG ACGCTGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132417957	ENSMUSSNP3528426	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50249963					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72851388 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	607 bp upstream
Cpgi3227	CpG island 3227	196 bp proximal
Rr450779	regulatory region 450779	108 bp distal
Rr450780	regulatory region 450780	117 bp proximal
Rr450781	regulatory region 450781	618 bp proximal
Tssr102861	transcription start site region 102861	267 bp downstream
Tssr102862	transcription start site region 102862	601 bp upstream
Tssr102863	transcription start site region 102863	618 bp upstream