rs50250578 SNP Detail

Summary

• ID
  rs50250578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79661758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGTCAC ACACAAGACC
  CTTTGAGATG GATCGAGTGA CCAGATACCC CATCTTCAGC AACCCCCGCT CAGCACGTGT
  CACCAGCTTG GTACTGGATG AAGATACCAG CTACACCGTT GAGCTAGTGG GCGTGGGGCC
  TGAGGCTGGT TGGAGCCAGG GTGATCTGCA GGCCTGGTCC ACTGAGTACC AGACCAGACC
  R
  GATGTAAAGA GAACAAACGT GTCTTCCAAC AGACGCGTCT TCCTTGGCCA GCAGTCCCCG
  AGGTCACTGT ACTTGGAAGA TGAGGATGAG GAGATAAAGT CTTATCACCT GGACGACAGC
  AGTGACACCC TCTGCAGGCA GCGGAGGGAG CTGGAGGCTG AGCGCTGGGC AGTCATCCAG
  AGCCAGGCAG TCAGGAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386540	NES15268618	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50250578					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386540	NES15268618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79661758 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216663	regulatory region 216663	43 bp proximal
Rr225117	regulatory region 225117	1357 bp distal
Rr228949	regulatory region 228949	843 bp proximal
Tssr94404	transcription start site region 94404	1306 bp downstream
Tssr94405	transcription start site region 94405	1229 bp downstream
Tssr94406	transcription start site region 94406	1204 bp downstream
Tssr94407	transcription start site region 94407	82 bp upstream
Tssr94408	transcription start site region 94408	194 bp upstream
Tssr94409	transcription start site region 94409	390 bp upstream