rs50251657 SNP Detail

Summary

• ID
  rs50251657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56498708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGGCAGG TATGGACTGG
  TTTTTTTGCT CCTCACCTTC CTTCACAGTG AGCAGCAGTC AGCACAAAGT CCTCTCGAAT
  AAGGAAGCCC CCACATATCG CCTCAGGCTG CTGATCCTTG ATCGAAAGTA AGGCCATGTA
  GGGTCGAGAG TGGGGCTTGA CTTCATGTCC CCCGATGATC TCCCCTGAAG GGAAAGCCAA
  Y
  CATTTTGTGG GCACCTGCTA GATCACCAGA TGGGTTTTGT CTGGTAGCTC CAGACTTGCT
  AGGCATTTGG GAGCCAGGGA GTCCTGGAGT TGGAAGGAGG TTGGGAGGAG TGCCCTCATT
  TTCCCCTTCT TTAAAAGGAG AGAAATATAG GTCTTGGCTT ATCAATCTTC CTTCCACACA
  GTTGGAGGCA AACATAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52723319	NES15569337	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	T		T
ss324645027	CHEV_14_56880088	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50251657					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723319	NES15569337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56498708 () rs orientation: forward

Symbol	Name	Function Class
Gzmb	granzyme B	within coordinates
Rr295614	regulatory region 295614	918 bp proximal
Tssr128924	transcription start site region 128924	921 bp downstream
Tssr128925	transcription start site region 128925	966 bp downstream
Tssr128926	transcription start site region 128926	982 bp downstream