rs50252639 SNP Detail

Summary

• ID
  rs50252639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:79627842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC GCTGAGCCCG GCGCCGGGGT
  Y
  CCGGCGACTC GGCCGGGGAA CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139812886	ENSMUSSNP5748531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324677536	CHEV_14_79790209	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50252639					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79627842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6774	CpG island 6774	within coordinates
Naa16	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	within coordinates
Rr404230	regulatory region 404230	244 bp upstream
Rr496090	regulatory region 496090	within coordinates
Rr496091	regulatory region 496091	301 bp proximal
Rr496092	regulatory region 496092	366 bp proximal
Rr496093	regulatory region 496093	389 bp proximal
Tssr129900	transcription start site region 129900	981 bp upstream
Tssr129901	transcription start site region 129901	237 bp downstream
Tssr129902	transcription start site region 129902	264 bp downstream