rs50252706 SNP Detail

Summary

• ID
  rs50252706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116696402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGCAGGC ATGGCCATAC
  GTGTCAGTAA CCTGTGCTGT GTGGGAAGGG ATTCAGGGAG GTTGCTGGGA TCGTCTGGCT
  GCCAGCCCAG CTTGAAGTTC AGTGAGAGTC CATGACTGAA GGAAATAAGA CAGAGTCCCC
  ATGTGTGCCT GTGAGCTCGC ACATGGCACA AGTGCAAATA CACGCATTAC ACACCCACAT
  R
  TGCATATGCA CACACATGCC CCCAAGGTTC AGAAAGTTTG CAACATTTAG TAGCTTGAAA
  TGGCCAAATC TATATCCTAC AAGACTGGGG AGTGACAGGC CTCAGGTTTA ATCTTGTTTT
  TGTGACAAGT TTATTTGCAT GTCACCTTTC TTATAACCAC ACATTGTTCT TGACAGTTGA
  AATACTGGAC AACGATAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135674975	ENSMUSSNP4286727	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50252706					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116696402 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			Intron
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			1336 bp proximal
Rr583801	regulatory region 583801			1367 bp proximal
Rr583802	regulatory region 583802			1608 bp proximal
Tssr31391	transcription start site region 31391			824 bp upstream
Tssr31392	transcription start site region 31392			910 bp upstream
Tssr31393	transcription start site region 31393			944 bp upstream
Tssr31394	transcription start site region 31394			966 bp upstream
Tssr31395	transcription start site region 31395			1611 bp upstream