rs50253202 SNP Detail

Summary

• ID
  rs50253202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGATGC CTAAGAAGCA
  TGCTCAGTAC TGTGTCTCCA AGAGCCCCAT CTTCCATCAA GCTGAGCCCC AACGATCATG
  GTGCACACCT CCCTCAGCAA GCAGCTTTTG ACTCCTGTCT CCTCTTCCCA TTCCAGTTCT
  TCACAGTGCT GCTGTTGTTT CTTGGGATTG CCTTCCAAAG AGATGCATGG CAGTTGAGAG
  Y
  TGAGTCTTAG GGTCACCTCC AAAAGAAGAG TTTGACCTCT GGGGAACACA AAATAAAACA
  CATGTCAGCA AGCTCCAGCA TCCTCACCTC TTCATGGCCA CGTTGTTGAG GAGTGTGAGG
  CCCAGATGGT CAGCTCAGTT GCTCAAGGTC ATAGGACTGG TGAATGGCAG AGCCTCACTT
  TGTCTGGGGC TCTCTGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62679629	NES17313182	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50253202					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679629	NES17313182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876714 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	1160 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Tssr143725	transcription start site region 143725	1138 bp upstream
Tssr143726	transcription start site region 143726	1226 bp upstream
Tssr143727	transcription start site region 143727	1249 bp upstream
Tssr143728	transcription start site region 143728	1269 bp upstream
Tssr143729	transcription start site region 143729	1281 bp upstream
Tssr143730	transcription start site region 143730	1304 bp upstream
Tssr143731	transcription start site region 143731	1326 bp upstream
Tssr143732	transcription start site region 143732	1340 bp upstream