rs50253542 SNP Detail

Summary

• ID
  rs50253542
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG GCAGGGAGAA TACAAGAAGG
  C
  GGGGGTAGGG GTGGTGGTGG GGGTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148117579	ENSMUSSNP6148800	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50253542					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1443 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	311 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	123 bp downstream
Rr398927	regulatory region 398927	1815 bp upstream
Rr606588	regulatory region 606588	1134 bp distal
Rr606589	regulatory region 606589	within coordinates
Rr606590	regulatory region 606590	799 bp proximal
Rr606591	regulatory region 606591	1715 bp proximal
Rr606592	regulatory region 606592	1742 bp proximal
Rr606593	regulatory region 606593	1778 bp proximal
Tssr40724	transcription start site region 40724	306 bp upstream
Tssr40725	transcription start site region 40725	324 bp upstream
Tssr40726	transcription start site region 40726	355 bp upstream
Tssr40727	transcription start site region 40727	400 bp upstream
Tssr40728	transcription start site region 40728	458 bp upstream
Tssr40729	transcription start site region 40729	1732 bp upstream
Tssr40730	transcription start site region 40730	1752 bp upstream
Tssr40731	transcription start site region 40731	1777 bp upstream
Tssr40732	transcription start site region 40732	1799 bp upstream
Tssr44980	transcription start site region 44980	1659 bp downstream
Tssr44981	transcription start site region 44981	1725 bp downstream