rs50254248 SNP Detail

Summary

• ID
  rs50254248
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:18294367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGTAAAG TTTTGTATCC
  GAATTTCCTA GTCAAGAGGC CTCATCCAGT CCTTATGAAA TCTGATTATT ACTGAAGATC
  TGCTGGGAGC AACCCTGTTT GAATGTTAAC TGCCTTGTCA GCCATAAGCA TTTACTTACA
  AAGTCTTGGT CTTAGTGGAA AAGTACTAGC TTAGTTGAGA TGTCTATGGG AAAAAGTTGA
  R
  ACCTCTATGA GAAAGTACTA CCCCTAGTTA AGAACAAATA GCTATAAATC TTGTGGACAA
  GCACCTAGCA ACCCATTCTG TTCTTTTTCT CCTGCTGAAC TTTTTACCTA GCCAATATCC
  TGCTTTTTTA GAACAGGTAC ATTCTCCCAG AAACAAAGCG ATTCTGTGTC ATATCCCCCC
  CCCCCCCCCG ACCCCCATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60702806	NES16337149	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50254248					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60702806	NES16337149	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:18294367 () rs orientation: forward

Symbol	Name	Function Class
Defb44-ps	defensin beta 44, pseudogene	579 bp upstream
Gm71262	predicted gene, 71262	474 bp upstream
Tssr11066	transcription start site region 11066	561 bp upstream
Tssr11067	transcription start site region 11067	535 bp upstream