rs50255659 SNP Detail

Summary

• ID
  rs50255659
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106700534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGA ACTCAGATCT GCCTGCTTCT
  S
  CTTCCCCGAG CACTGGGATT AAAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136940638	ENSMUSSNP6339096	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss323187393	CHEV_9_106725666	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50255659					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106700534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	619 bp distal
Dcaf1	DDB1 and CUL4 associated factor 1	within coordinates
Rr368848	regulatory region 368848	1303 bp downstream
Rr401655	regulatory region 401655	588 bp downstream
Rr686402	regulatory region 686402	1451 bp distal
Rr686403	regulatory region 686403	79 bp distal
Tssr86935	transcription start site region 86935	1341 bp downstream
Tssr86936	transcription start site region 86936	1319 bp downstream
Tssr86937	transcription start site region 86937	1301 bp downstream