rs50256080 SNP Detail

Summary

• ID
  rs50256080
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA CCACCCGTCC AGCTTTCTCA
  G
  ACACAGTCCC TGGGGACTGC ATTCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148000286	ENSMUSSNP714361	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321418885	CHEV_4_147663344	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50256080					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	453 bp distal
Disp3	dispatched RND transporter family member 3	1270 bp upstream
Gm68159	predicted gene, 68159	311 bp downstream
Rr604639	regulatory region 604639	1281 bp distal
Rr604640	regulatory region 604640	958 bp distal
Rr604641	regulatory region 604641	1060 bp distal
Rr604642	regulatory region 604642	401 bp distal
Rr604643	regulatory region 604643	917 bp distal
Rr604644	regulatory region 604644	782 bp distal
Rr604645	regulatory region 604645	637 bp distal
Rr604646	regulatory region 604646	1883 bp proximal
Tssr44603	transcription start site region 44603	1281 bp upstream