rs50256884 SNP Detail

Summary

• ID
  rs50256884
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:23347077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAAGTGC ATGTAGTTCC
  TGGTAAGTCA AATCACACTT TGTGTAGGCT TCCACTAAAG AATATTTGGT CTTGATTGGG
  GGAGGCATGC ACAGTAGATA AGGAAGTGGA GTGGTTGGGT GGACCTGGGG AGAGTTACAG
  GTTTGCAGTT GGTAAATAAG ATAAAAATAA ATTGTATGAA ATTCCCAAGG AACTAATCGA
  W
  TTTCTTGGAA ACCTTATTTA ATTTTTTATT GGATGATTGA TTGATTGATT TAATTTCAGA
  TGCTATCCCC TCTCCAGGTC TCCCCTTCAG AAATGCCCTA TCTCATCCTC CTTCCCCCTA
  CCTCTATGGG GGTGCTCACT CACCCACCCA CTCCCTCCTT CCCACATTGG CATTCCCCTA
  CACTGGGGCA TCGACCACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60709299	NES16359937	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50256884					SNP	A	T	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60709299	NES16359937	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:23347077 () rs orientation: forward

Symbol	Name	Function Class
Gm70599	predicted gene, 70599	1691 bp downstream
Rr370991	regulatory region 370991	229 bp downstream