rs50257012 SNP Detail

Summary

• ID
  rs50257012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41520855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCTGGC TGCCCTCTGA
  TCTGCACTCT CCTCTGTGAC CTGGGATGAG ATCAGTGGGA ATGGTTAGAG ACACGCCTTC
  GAAAAGTGCC CTGTCTCTGA AGAACTCAAG AGACAGTTAG CCCCATCTCT GCAGTAGATC
  TGAGCCAGTG ACTAGGACTC CCCAAAGGGA ACTGAAGAGC CACCTGCAAA GGACCAGGCC
  Y
  GAAGTCCACA CATTTAGTAA TTCTTTTTTT TTTTTTTTTT TTTTTCTGAA ATGGTTTCTC
  ACTGTGTAGC CCTGACTAGA CTAGAACTTG CTATGCAGAA CAAGCTGGCT TGAAACTCAC
  AGACATCCAC CTGCCTCTGT CTCCTTAGGT ATGAGATTAC AAGTGTGCAC CACCACACCT
  AGCTCAGTAC ATTTTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52248948	NES15256737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50257012					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52248948	NES15256737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41520855 () rs orientation: forward

Symbol	Name	Function Class
Ccdc162	coiled-coil domain containing 162	within coordinates