rs50257922 SNP Detail

Summary

• ID
  rs50257922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148370803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCAGGA AAAGGAACGA
  AGGCGGCCAG AAAGGATGAT GGACGGGAAA GAGCAAAGGG TGTGCATTTG AAAGATAACC
  CTGGGAAGGA GAACAGCCAG CAAAGAGCAC TAGCAAAGAT TGCAGACCCT GGAGGCAGAA
  GATATGCCAG GAAGAGGTCT GAGTGGTCAT GGGGGCGAAG AGTCTGAAAT GGACACTGAG
  Y
  TTCAAACCAA GACTGTAAGG CGCCTGCCTG CCTGCCTGCC TGCCTGGCTG GGCTGCTGCC
  CGGAGCTTCC CTTGAGCCTA ACAGCTGCTT CTCTCCTTTT GGCAGATACT CTGATTCGGG
  GAGGTCTGCA GTAGAAGAGG AGGGGGCTGA TTGAGCCTGT GTGTTTGTGT GTGTGCACGC
  CAGTGTCTGT GACCCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148000181	ENSMUSSNP3902566	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50257922					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148370803 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15301	CpG island 15301			374 bp proximal
Disp3	dispatched RND transporter family member 3			Intron
				Noncoding-Transcript-Variant
Gm68159	predicted gene, 68159			1921 bp upstream
Rr604638	regulatory region 604638			1464 bp distal
Rr604639	regulatory region 604639			within coordinates
Rr604640	regulatory region 604640			1609 bp proximal
Rr604641	regulatory region 604641			1808 bp proximal
Rr604642	regulatory region 604642			1932 bp proximal
Rr604643	regulatory region 604643			1951 bp proximal
Tssr44603	transcription start site region 44603			1581 bp downstream