rs50257961 SNP Detail

Summary

• ID
  rs50257961
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28908584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC CCACTCCTTG TGCCTGGGAC
  M
  CTCCTGGCTC TGCAGGTGAC CCAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60560558	NES16578128	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	C	A	C	C	C	A	C	C
ss145423329	ENSMUSSNP1013737	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50257961					SNP	A	C	A	C	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60560558	NES16578128	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28908584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8895	CpG island 8895	within coordinates
Cpgi8896	CpG island 8896	1143 bp proximal
Mapk14	mitogen-activated protein kinase 14	1732 bp upstream
Rr370201	regulatory region 370201	1516 bp upstream
Rr524631	regulatory region 524631	within coordinates
Rr524632	regulatory region 524632	175 bp proximal
Rr524633	regulatory region 524633	1229 bp proximal
Slc26a8	solute carrier family 26, member 8	within coordinates
Tssr143452	transcription start site region 143452	1718 bp upstream
Tssr143453	transcription start site region 143453	1778 bp upstream
Tssr143454	transcription start site region 143454	1809 bp upstream
Tssr143455	transcription start site region 143455	1852 bp upstream
Tssr147147	transcription start site region 147147	148 bp downstream
Tssr147148	transcription start site region 147148	158 bp downstream
Tssr147149	transcription start site region 147149	173 bp downstream
Tssr147150	transcription start site region 147150	1535 bp downstream
Tssr147151	transcription start site region 147151	1609 bp downstream