rs50258077 SNP Detail

Summary

• ID
  rs50258077
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78238995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGAGAA AGGAAGACAT
  GAAAAACTGA TGTGCTAATG GAGACAGGAA TGTCCAAGGC TAACCAGAAG CAACTCAGCC
  AGTTTTCACA TTGGGAGACA GAGATGGGGT GATGGAGGTG GAGCTGGGGA CAGCATGAGG
  AAGACTGGAG AAGAAAGCAG GCTACAGAGA GCAGGAGACA GAGCTGAGGG AAGGGCCTGC
  W
  CAGACAGAGC ATGACAGAGG CCTGCTCAGA CATTGAGTGA GCAAACATAA AAACACATGA
  CAAAGGCCTG CTCAGACATT GAGTGATAAA AAACACATGA TTGTAGATAA AAGAGAGGCC
  AGAAGCCTCC TGCCAGGATC AGGGGTCCAA GGAGAGGGCT TCAGGATATG CCCGTTTTTC
  ATTACAAAGG GCAACATATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61427565	NES16811991	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50258077					SNP	A	A	A	A	A	A	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427565	NES16811991	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78238995 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	1592 bp upstream