rs50258116 SNP Detail

Summary

• ID
  rs50258116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129059819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC CCACAGGCTG CAAGGCTGGT
  K
  GCTAGGAAGG TGTTGGGCAT CCGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144458584	ENSMUSSNP1683284	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss321689226	CHEV_5_129488630	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50258116					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129059819 () rs orientation: forward

Symbol	Name	Function Class
Rr109750	regulatory region 109750	619 bp distal
Rr127045	regulatory region 127045	619 bp distal
Rr127046	regulatory region 127046	within coordinates
Stx2	syntaxin 2	1802 bp downstream