rs50258437 SNP Detail

Summary

• ID
  rs50258437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:53882895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCTACC AGTCTTCTAG
  TGGGTAAATA TTTGGTCCTT ACTGCTCTGC AGGTCTCTCT AGGCAGTTAT CTCAATGAGG
  ATGTAGATGC AAGGAAATGG TTGCTATTTT GGCTTTTTTT GCATTGAAGT TATATATTTA
  CAACAGATCA TAACTAAAAT ACCTTTCATA TATTTTGAAG AGAAGGATAA ATTTGAGCCC
  R
  ATTCTTGAAC AGCATTTGTG AGTATGGCTG AAGTGGATTC AATTGTATTC CTCGGTTTTG
  TTTGCTTTTA TGATAATTTT TTTGTTTTGT GGAAAGTTTA GTACATACAT GTTTAAAATT
  ATACATCAGT TATTTTATGT TATCAAATTT TAGTTTCAAA AAAATACAAC AACCAAATTG
  GTGTTAAATC TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52308686	NES15297937	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50258437					SNP	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52308686	NES15297937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:53882895 () rs orientation: forward

Symbol	Name	Function Class
A030011A13Rik	RIKEN cDNA A030011A13 gene	208 bp downstream
Man1a	mannosidase 1, alpha	within coordinates
Rr401891	regulatory region 401891	555 bp downstream
Rr431501	regulatory region 431501	371 bp distal
Rr431502	regulatory region 431502	1617 bp proximal