rs50258623 SNP Detail

Summary

• ID
  rs50258623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153630376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG TTGCTTCTTG AAAAGGGAGC
  Y
  GATAAGTGTG ACGATCTTGT TTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MSM/Ms	WSB/EiJ
ss60819901	NES16430914	PERLEGEN	MM_PANEL2	f	SNP			T	C	C		C
ss145749477	ENSMUSSNP4176942	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MSM/Ms	WSB/EiJ
rs50258623					SNP	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819901	NES16430914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153630376 () rs orientation: forward

Symbol	Name	Function Class
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr420751	regulatory region 420751	1768 bp distal
Tssr9487	transcription start site region 9487	1828 bp downstream
Tssr9488	transcription start site region 9488	1799 bp downstream
Tssr9489	transcription start site region 9489	1762 bp downstream
Tssr9490	transcription start site region 9490	1639 bp downstream