rs50258876 SNP Detail

Summary

• ID
  rs50258876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84326235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAATGAGA TCACCAAAAG ACATGCTAAT GTGCCTGCCT
  TTAAACAAAG AACCACAGGG AACTAAAAAC TGCAGAGAGG GGAAGAATCA GTCTTCCCCA
  R
  GAATGAGACC CCTAATTGAT CATCCACTAC TAAATGGTCA GCCCTGAAAT CATATGTATA
  AACAGTAAAC GGTCTCAGCT GGGTGTTTTT TTTTTTAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145357722	ENSMUSSNP2025820	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322745016	CHEV_8_86123505	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50258876					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84326235 () rs orientation: forward

Symbol	Name	Function Class
Gm18001	predicted gene, 18001	407 bp upstream
Gm42029	predicted gene, 42029	229 bp downstream
Rr178048	regulatory region 178048	1035 bp distal
Rr181860	regulatory region 181860	835 bp distal
Rr185419	regulatory region 185419	1095 bp distal