rs50259168 SNP Detail

Summary

• ID
  rs50259168
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138476881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG ATTGACGTGG GAGGGTCCAG
  M
  CTCTGTGGGC CGGTCCATCC CTAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147656055	ENSMUSSNP396823	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321376734	CHEV_4_138305485	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50259168					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138476881 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2f	phospholipase A2, group IIF	961 bp downstream
Rr603010	regulatory region 603010	1330 bp distal
Rr603011	regulatory region 603011	1571 bp distal
Rr603012	regulatory region 603012	462 bp distal
Rr603013	regulatory region 603013	694 bp distal