rs50259792 SNP Detail

Summary

• ID
  rs50259792
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82602970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGGGGGC TTGTGGTATG
  TGAGCACAGG CTGGGCAGCT GTGAGAGTCC AGAGTGGGGT GGCCCTGGGG ACACTTCCAG
  GCCAGCTATC CCCTGCACCC CACCAGCTGA TTTCGAGCGT GGCAGAGGGA AGGAAAGGGG
  CGAGTGGGCT GGGCAATGGC CCCAACAGGA AACGGGGACT TAGGAGAACA CGCTGGAGAT
  A
  TGTGTGGCCG CCAAATGTCA CCATCTCTCC TCAGTGGCTC CCCAGAGCTG GTGCTTTTAA
  GAACCCTGTT TCCTCTCAGA GCCCAGGGAG AGTCCAAGGA CATGGCGCAT CTGGAAGTGG
  GACTGCAGGA GTTCTCTGGT GGCCTCGTGC TGTCCCTCTG GCCACTTCTC ATGGTGGGGT
  GGTCAGCGGC AGCTCGCCAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147616967	ENSMUSSNP3369288	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50259792					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82602970 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	1615 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	710 bp distal
Tssr152152	transcription start site region 152152	720 bp downstream
Tssr152153	transcription start site region 152153	596 bp downstream
Tssr152154	transcription start site region 152154	573 bp downstream
Tssr152155	transcription start site region 152155	537 bp downstream
Tssr152156	transcription start site region 152156	468 bp downstream
Tssr152157	transcription start site region 152157	390 bp downstream
Tssr152158	transcription start site region 152158	353 bp downstream
Tssr152159	transcription start site region 152159	329 bp downstream
Tssr152160	transcription start site region 152160	283 bp downstream
Tssr152161	transcription start site region 152161	267 bp downstream
Tssr152162	transcription start site region 152162	246 bp downstream
Tssr152163	transcription start site region 152163	229 bp downstream
Tssr152164	transcription start site region 152164	184 bp downstream
Tssr152165	transcription start site region 152165	111 bp downstream
Tssr152166	transcription start site region 152166	75 bp downstream
Tssr152167	transcription start site region 152167	43 bp downstream
Tssr152168	transcription start site region 152168	14 bp downstream
Tssr152169	transcription start site region 152169	32 bp upstream
Tssr152170	transcription start site region 152170	113 bp upstream
Tssr152171	transcription start site region 152171	173 bp upstream
Tssr152172	transcription start site region 152172	280 bp upstream
Tssr152173	transcription start site region 152173	303 bp upstream
Tssr152174	transcription start site region 152174	321 bp upstream
Tssr152175	transcription start site region 152175	344 bp upstream
Tssr152176	transcription start site region 152176	553 bp upstream
Tssr152177	transcription start site region 152177	721 bp upstream
Tssr154083	transcription start site region 154083	615 bp upstream
Tssr154084	transcription start site region 154084	561 bp upstream
Tssr154085	transcription start site region 154085	304 bp upstream
Tssr154086	transcription start site region 154086	223 bp downstream
Tssr154087	transcription start site region 154087	438 bp downstream
Tssr154088	transcription start site region 154088	478 bp downstream
Tssr154089	transcription start site region 154089	589 bp downstream
Tssr154090	transcription start site region 154090	661 bp downstream