rs50261111 SNP Detail

Summary

• ID
  rs50261111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79973922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCACGGT CATTGTGTAA
  ACCACATATA CGTAGATAGG TTGATTAGTT CATTGATTTC CCGTGTGCCG GGTGACAAGC
  GTGTTAATAT GAGTAATTGG GATTGGAATA AAATCACCTT GGCTAGATTA CCAAGGTGTA
  GGCGGCATAC TTGTTGTTGA AACTGCTCCA CCCTGTGAAT TTATTGTTAT GAGATAAATC
  R
  TGGAAAGATA TGAACGTGTT CATCTATGTG TGCCATAGAA CTCAGGACAA GGTACATATG
  GGCAAGAGGA GGATATTTGT ACAACATTCA AGGACTTGTA GTAAGTACCG GTGCTGGCTG
  CTCAGCCCAG GAACCTCCTG ACCACACAGT TTTGTGCTTC AGGGAAAATG CTTTGTTAGA
  TGTGATGGCT AATGCCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss63570356	NES17024166	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs50261111					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63570356	NES17024166	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79973922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	1048 bp proximal
Gm24204	predicted gene, 24204	1168 bp upstream
Gm31134	predicted gene, 31134	1012 bp downstream
Rr304341	regulatory region 304341	722 bp distal
Rr312104	regulatory region 312104	878 bp proximal
Syngr1	synaptogyrin 1	1615 bp upstream
Tssr132156	transcription start site region 132156	1477 bp upstream
Tssr132157	transcription start site region 132157	1599 bp upstream
Tssr135417	transcription start site region 135417	818 bp upstream